Plant Development: Gametophytes, Fertilisation, Embryo and Meristems, Patterning, Flowering, Light and Hormones

This chapter answers Section XL2.3 of XL2 Botany, one of the five optional sections of the Life Sciences (XL) paper: “Life cycle of an angiosperm; Development of male and female gametophyte; Cell fate determination and tissue patterning; Spacing mechanisms in trichomes and stomata; Embryogenesis, organization and function of shoot and root apical meristems; Transition to flowering: photoperiodism and vernalization; ABC model of floral organ patterning, pollen germination, double fertilization, seed development; Xylem and phloem cell differentiation, photomorphogenesis; Phytochrome, cryptochrome, phototropin; Role of auxin, cytokinin, gibberellins, and brassinosteroids on plant development.” It follows the life cycle from spore to seed, then the genetic logic of the embryo axis, meristems, cell fate and spacing, flowering time and floral organ identity, vascular differentiation, light signalling and the four growth hormones, using Arabidopsis mutants as the evidence. Its numericals are meiosis and ploidy counts, organ counts under the ABC model and the stomatal index.

1. Life cycle and the two gametophytes

An angiosperm alternates a dominant diploid sporophyte with tiny haploid gametophytes that develop inside its flowers. In the anther each microspore mother cell (2n) undergoes meiosis to a tetrad of four microspores. A microspore divides asymmetrically (pollen mitosis I) into a large vegetative cell and a small generative cell that it engulfs; the generative cell divides (pollen mitosis II) into two sperm cells, either before pollen is shed (three-celled pollen, as in grasses and Arabidopsis) or in the pollen tube (two-celled pollen, as in most species). In the ovule a megaspore mother cell undergoes meiosis to a linear tetrad. In the commonest, monosporic Polygonum type, the three micropylar megaspores degenerate and the chalazal one goes through three free-nuclear mitoses to eight nuclei, which are walled into seven cells: an egg flanked by two synergids (bearing the filiform apparatus) at the micropylar end, three antipodals at the chalazal end, and a large central cell with two polar nuclei. Bisporic (Allium) and tetrasporic (Fritillaria, whose endosperm becomes pentaploid) types also occur.

⚠️ Whose tissue is it?
Egg, synergids, antipodals and sperm are gametophytic (n). Nucellus and integuments, and so the seed coat, are 2n tissue of the mother sporophyte; the zygote and embryo are 2n of the new generation; the Polygonum-type endosperm is 3n. The seed is therefore a mosaic of three genetic origins.

2. Pollen germination, double fertilisation and seed development

A compatible pollen grain hydrates on the stigma and puts out a pollen tube through an aperture. The tube grows only at its tip, driven by a tip-focused Ca²⁺ gradient, actin and secretion, and carries the vegetative nucleus and sperm down the transmitting tract of the style. Near the ovule it is guided by LURE peptides secreted by the synergids (first found in Torenia) and usually enters through the micropyle (porogamy); entry through the chalaza (chalazogamy, Casuarina) or the integuments (mesogamy, Cucurbita) is rarer. The tube bursts into one synergid, which degenerates. In double fertilisation, discovered by Nawaschin in 1898 in Lilium martagon and Fritillaria tenella, one sperm fuses with the egg (syngamy, giving the diploid zygote) and the other with the two polar nuclei (triple fusion, giving the triploid primary endosperm nucleus). Each seed needs one megaspore mother cell (one meiosis), while one pollen meiosis yields four grains, so n seeds need n + n/4 meioses: 100 seeds need 125.

Endosperm develops as nuclear (free nuclei first, walls later; the commonest; coconut water is free-nuclear endosperm and the kernel is cellular), cellular (a wall after every division) or helobial (a first wall, then free-nuclear development in each chamber; many monocots). Integuments become the seed coat and the ovary wall the pericarp. Pea, bean and groundnut absorb the endosperm into the cotyledons (non-endospermic seeds); cereals, castor and coconut keep it (endospermic); a persistent nucellus forms perisperm in black pepper and beet. Late in maturation abscisic acid drives storage-protein and LEA-protein synthesis, desiccation tolerance and dormancy; at germination in cereals, gibberellin from the embryo makes the aleurone layer secrete α-amylase.

3. Embryogenesis and the shoot and root apical meristems

In Arabidopsis the zygote elongates and divides asymmetrically: the small apical cell forms most of the embryo, the large basal cell the suspensor and the hypophysis, which gives the quiescent centre and columella of the root. The embryo passes through octant, dermatogen (16 cells, protoderm set apart by periclinal divisions), globular, heart (cotyledon primordia, bilateral symmetry) and torpedo stages. Auxin sets the apical–basal axis: PIN7 first pumps it up into the apical cell; from the globular stage PIN1 and relocated PIN7 send it down to the embryo base, where MONOPTEROS (ARF5), freed from its Aux/IAA repressor BODENLOS, triggers the signals that make the hypophysis the root founder. mp and bdl embryos lack root and hypocotyl; gnom embryos, defective in PIN trafficking, are balls without polarity.

The shoot apical meristem has a central zone of slowly dividing stem cells, a peripheral zone where primordia arise at auxin maxima (setting phyllotaxis), and a rib zone that builds the stem; it is also layered L1, L2 (tunica) and L3 (corpus). Its size is held by feedback: WUSCHEL (WUS), made in the organising centre beneath the stem cells, moves up, keeps them as stem cells and induces CLAVATA3, a secreted peptide that acts through the CLV1 receptor kinase to repress WUS. wus meristems terminate early; clv meristems enlarge and their flowers make extra organs. The KNOX gene SHOOT MERISTEMLESS keeps central cells undifferentiated.

The root apical meristem surrounds a quiescent centre (QC) that expresses WOX5, the root counterpart of WUS, and keeps the neighbouring initials undifferentiated. Behind it lie the zones of division, elongation and maturation; in front, the columella of the root cap senses gravity with starch-filled amyloplasts. Overlapping gradients of auxin and PLETHORA transcription factors position this stem-cell niche.

4. Cell fate, tissue patterning and the spacing of trichomes and stomata

Plant cells do not migrate, so position, not lineage, decides fate: when a root initial is killed by laser ablation, a neighbour fills the gap and takes on the fate of its new position. The root’s radial pattern is set by SHORTROOT (SHR), a transcription factor made in the stele that moves one layer outward and, with SCARECROW (SCR), drives the periclinal division that separates endodermis from cortex. shr roots have one ground-tissue layer lacking endodermal identity; scr roots have one layer with mixed cortical and endodermal features. In the root epidermis, cells over the junction of two cortical cells (H position) form hairs and cells over a single cortical cell (N position) do not: in N cells WEREWOLF (MYB), GL3/EGL3 (bHLH) and TTG1 (WD40) switch on GLABRA2, which blocks hair fate, while the small MYB protein CAPRICE moves into H cells and lets them form hairs.

Trichomes on an Arabidopsis leaf are spaced by lateral inhibition. An activator complex of GLABRA1 (MYB), GL3/EGL3 and TTG1 promotes trichome fate through GL2 and also induces small single-repeat MYB inhibitors, TRIPTYCHON (TRY) and CPC, which move into neighbouring cells and displace GL1 from the complex. gl1 and ttg1 leaves are hairless; try leaves bear trichomes in clusters.

Stomata follow the one-cell spacing rule: two stomata are separated by at least one pavement cell. A protodermal cell divides asymmetrically (SPEECHLESS, SPCH) to form a meristemoid; after amplifying divisions it becomes a guard mother cell (MUTE), which divides once symmetrically into two guard cells (FAMA), and spacing divisions place new meristemoids away from existing stomata. The peptides EPF1 and EPF2, acting through TOO MANY MOUTHS (TMM), ERECTA-family receptors and the YODA MAP kinase cascade, destabilise SPCH, whereas STOMAGEN (EPFL9) from the mesophyll raises stomatal density. spch leaves lack stomata, mute arrests at the meristemoid, fama forms stacks of small cells instead of guard cells, and tmm or yoda leaves show clustered stomata. Density is compared as the stomatal index, SI = 100 × S/(S + E), with S stomata and E other epidermal cells in a field; it varies less with leaf expansion than stomata per mm².

5. Transition to flowering: photoperiodism and vernalisation

Garner and Allard (1920) showed that ‘Maryland Mammoth’ tobacco and Biloxi soybean flower in response to day length. Short-day plants (Xanthium, soybean, chrysanthemum) flower when the night exceeds a critical night length; long-day plants (Arabidopsis, wheat, spinach, Hyoscyamus) flower when it is shorter; day-neutral plants (tomato) ignore it. Plants measure the dark period: a brief night break prevents flowering in a short-day plant and promotes it in a long-day plant. Red light is the effective break and far-red given at once reverses it, which implicates phytochrome. Leaves perceive day length and the apex responds, so a mobile signal, which Chailakhyan named florigen in 1936, passes between them.

Florigen is the FLOWERING LOCUS T (FT) protein (Hd3a in rice). The circadian clock makes CONSTANS (CO) mRNA peak late in the day; only in long days does this peak meet light, which stabilises CO protein (in darkness the COP1 ligase degrades it), so CO induces FT in leaf phloem companion cells: the external coincidence model. FT travels in the phloem to the apex, binds the bZIP protein FD and activates SOC1 and APETALA1, which with LEAFY switch the meristem to making flowers.

Vernalisation is the promotion of flowering by prolonged cold, perceived by the shoot apex, as in winter wheat, biennial Hyoscyamus and winter-annual Arabidopsis. In winter-annual Arabidopsis, FRIGIDA keeps the MADS-box repressor FLOWERING LOCUS C (FLC) high, and FLC blocks FT and SOC1. Prolonged cold induces VIN3 and, with Polycomb Repressive Complex 2 (including VRN2), lays H3K27me3 on FLC, silencing it epigenetically: the silence persists through mitosis after warming, so the plant flowers in spring, but FLC is reset in the next generation, so every seedling needs its own winter. Gibberellin also promotes flowering in Arabidopsis, most clearly in short days.

6. The ABC model of floral organ identity

Coen and Meyerowitz (1991), working on Arabidopsis and Antirrhinum, explained floral organ identity with three overlapping gene functions acting in four whorls: A alone gives sepals (whorl 1), A + B petals (whorl 2), B + C stamens (whorl 3) and C alone carpels (whorl 4). A and C are mutually antagonistic: without A, C spreads into whorls 1 and 2; without C, A spreads into whorls 3 and 4. C also terminates the floral meristem, so loss of C makes the flower indeterminate. In Arabidopsis, A = APETALA1 and APETALA2, B = APETALA3 and PISTILLATA, C = AGAMOUS; all are MADS-box genes except AP2, an AP2/ERF factor. In Antirrhinum, B is DEFICIENS and GLOBOSA and C is PLENA. The E function, the SEPALLATA genes (SEP1–4), is needed with B and C for petals, stamens and carpels (the floral quartet model): the sep1 sep2 sep3 triple mutant makes only sepal-like organs.

Organ identity in the four whorls under the ABC model
GenotypeWhorl 1Whorl 2Whorl 3Whorl 4
Wild typeSepalPetalStamenCarpel
A lost (ap2)CarpelStamenStamenCarpel
B lost (ap3 or pi)SepalSepalCarpelCarpel
C lost (ag)SepalPetalPetalA new flower starts; the pattern repeats
B expressed in all whorlsPetalPetalStamenStamen
A, B and C all lostLeaf-likeLeaf-likeLeaf-likeLeaf-like
🧠 Worked count
Take an idealised Arabidopsis flower with 4 sepals, 4 petals, 6 stamens and 2 carpels, and assume each whorl keeps its organ number in a mutant. Losing B turns whorl 2 into sepals and whorl 3 into carpels: 4 + 4 = 8 sepals and 6 + 2 = 8 carpels, with no petals or stamens. Real mutants often fuse or lose inner organs, so such counts are model exercises, not observations.

7. Xylem and phloem cell differentiation

Vascular strands form where auxin flowing from young leaves is canalised into narrow files of procambium. In the Zinnia elegans system, isolated leaf mesophyll cells given auxin and cytokinin transdifferentiate into tracheary elements: they lay down patterned, lignified secondary walls and then undergo programmed cell death, in which the vacuole bursts and hydrolases clear the protoplast. The NAC transcription factors VND7 and VND6 switch on protoxylem and metaxylem vessel formation respectively, and brassinosteroids promote it. A sieve element instead stays alive but loses its nucleus, vacuole and most organelles, builds callose-lined sieve plates and relies on its sister companion cell; the MYB factor APL (ALTERED PHLOEM DEVELOPMENT) is needed for phloem identity. The peptide TDIF (from CLE41/44), secreted by phloem cells, binds the PXY/TDR receptor on procambial cells, keeping them dividing and holding back their differentiation into xylem.

🎯 Xylem dies, phloem lives
A tracheary element finishes its job by dying: an empty, lignified tube conducts water under tension best. A sieve element must stay alive, without a nucleus, because loading and flow depend on a living plasma membrane, so a companion cell keeps it running. Any statement that a mature vessel element is alive, or that a mature sieve-tube member has a nucleus, is wrong.

8. Photomorphogenesis: phytochrome, cryptochrome and phototropin

A seedling grown in darkness shows skotomorphogenesis (etiolation): a long hypocotyl, an apical hook, closed unexpanded cotyledons and etioplasts. Light switches it to photomorphogenesis: a short hypocotyl, open green cotyledons and chloroplasts. In darkness the E3 ubiquitin ligase COP1 marks the transcription factor HY5 for destruction in the nucleus, and PIF proteins (bHLH) promote elongation; light inactivates COP1 and photoreceptors trigger PIF degradation, so HY5 accumulates and drives light-regulated genes. Hence cop1 mutants look light-grown even in darkness. In phototropism, blue light on one side activates phototropin, auxin moves to the shaded flank and its faster elongation bends the shoot towards the light. UV-B is sensed separately by UVR8, whose chromophore is built from its own tryptophan residues.

The three photoreceptor families named in the syllabus
PhotoreceptorLight and chromophoreDevelopmental roles
Phytochromes (PHYA–PHYE in Arabidopsis)Red and far-red; the linear tetrapyrrole phytochromobilin; Pr (absorbs red, about 660 nm) ⇄ Pfr (absorbs far-red, about 730 nm), Pfr activeRed/far-red-reversible seed germination (lettuce), de-etiolation, shade avoidance (low red:far-red lowers Pfr and speeds elongation), night-break responses; phyA is light-labile and mediates very-low-fluence and far-red high-irradiance responses, phyB is light-stable and mediates reversible low-fluence responses
Cryptochromes (CRY1, CRY2)Blue and UV-A; FAD with a pterin antennaInhibition of hypocotyl elongation in blue light, cotyledon expansion, entrainment of the circadian clock, photoperiodic flowering (CRY2)
Phototropins (PHOT1, PHOT2)Blue; two LOV domains, each binding FMN, joined to a serine/threonine kinasePhototropism, chloroplast accumulation and avoidance movements (PHOT2 for avoidance in strong light), blue-light stomatal opening, leaf flattening

9. Auxin, cytokinin, gibberellins and brassinosteroids in development

The four growth hormones named in the syllabus
HormonePerception and signallingDevelopmental rolesTelling mutants and facts
Auxin (IAA)Made from tryptophan (TAA1, YUCCA); polar transport by PIN efflux and AUX1/LAX influx carriers; TIR1/AFB F-box receptors send Aux/IAA repressors for degradation, freeing ARF transcription factorsEmbryo axis, phyllotaxis, vascular strands, apical dominance, lateral and adventitious roots, tropisms, fruit setpin1: a bare, pin-like inflorescence without flowers; mp: rootless embryo
Cytokinin (zeatin)Adenine derivatives made by IPT; histidine-kinase receptors (AHK2, AHK3, CRE1/AHK4) phosphorelay through AHPs to type-B ARR transcription factorsCell division with auxin; shoot initiation in culture; release of lateral buds; delay of leaf senescence; promotes shoot-meristem activity but limits root-meristem sizeSkoog and Miller: high cytokinin:auxin gives shoots, high auxin:cytokinin gives roots; senescence-induced IPT transgenes keep leaves green longer
Gibberellins (GA₁, GA₄)The soluble receptor GID1 binds GA and then DELLA repressors, which are ubiquitinated by SCF(SLY1/GID2) and degradedStem elongation and bolting, seed germination and aleurone α-amylase, flowering in many long-day rosette plants, fruit growth (seedless grapes)Mendel’s dwarf pea le lacks GA 3-oxidase; Green Revolution wheat Rht-B1b and Rht-D1b are GA-insensitive DELLA alleles, while rice sd1 lacks a GA 20-oxidase
Brassinosteroids (brassinolide)The plasma-membrane receptor kinase BRI1, with co-receptor BAK1, inhibits the GSK3-like kinase BIN2, letting BZR1/BES1 actCell elongation and division, xylem differentiation, pollen-tube growth and fertility, repression of photomorphogenesis in darknessdet2 (a biosynthesis mutant) is dwarf and looks light-grown in darkness; bri1 is a dwarf that brassinolide cannot rescue
⚠️ Deficient or insensitive?
If applying the hormone rescues a dwarf, the mutant cannot make the hormone (le, sd1, det2). If it does not, the block lies in perception or signalling (bri1, the Rht DELLA alleles). This one test separates most hormone-mutant questions.

Key takeaways

  • The male gametophyte is three cells (vegetative cell and two sperm); the Polygonum-type embryo sac has seven cells and eight nuclei; double fertilisation gives a 2n zygote and a 3n endosperm, and n seeds need n + n/4 meioses.
  • Auxin flux (PIN7, PIN1) and MONOPTEROS set the embryo axis; the WUS–CLV3 loop holds shoot-meristem size, WOX5 and PLETHORA the root niche, and SHR–SCR make the endodermis.
  • Position decides fate. Root hairs form in the H position; trichomes and stomata are spaced by lateral inhibition (TRY and CPC; EPF–TMM–ERECTA–YODA acting on SPCH); SPCH, MUTE and FAMA run the stomatal lineage; SI = 100 × S/(S + E).
  • Plants measure night length; a red night break, reversed by far-red, acts through phytochrome; CO induces FT in leaves only in long days, and FT with FD switches the apex. Cold silences FLC epigenetically, and the silence is reset each generation.
  • ABC(E): A sepals, A + B petals, B + C stamens, C carpels; A and C are antagonistic; loss of C makes flowers indeterminate; SEPALLATA is required for the inner three organ types.
  • Tracheary elements build walls then die (VND6, VND7); sieve elements live without a nucleus (APL). Phytochrome senses red/far-red, cryptochrome and phototropin blue; GA works by destroying DELLAs, BR via BRI1–BIN2, auxin via TIR1–Aux/IAA–ARF.

Practice questions (18)

Attempt each one before opening the answer. Every explanation names the tempting wrong option as well as the right one, because that is where marks are lost.

  1. A diploid angiosperm with Polygonum-type embryo sacs is to produce 80 seeds. Assume each seed develops from one ovule containing one megaspore mother cell, each fertilisation uses the sperm of one pollen grain, each microspore mother cell gives four pollen grains, and nothing is wasted. The minimum number of meiotic divisions required is ____.

    Numerical answer — type the value.

    Show answer

    Answer: 100

    Female side: one meiosis per ovule, because one megaspore mother cell gives the single functional megaspore that forms the embryo sac: 80 meioses. Male side: each seed needs one pollen grain (its two sperm serve syngamy and triple fusion), and one meiosis gives four grains, so 80 ÷ 4 = 20 meioses. Total = 80 + 20 = 100. Counting 160 pollen grains because two sperm are used is the usual slip; both sperm come from the same grain.
  2. In a diploid angiosperm with a Polygonum-type embryo sac, add the ploidy levels (as multiples of n) of the following: the zygote, the primary endosperm nucleus, one antipodal cell, one synergid and one cell of the seed coat. The sum is ____.

    Numerical answer — type the value.

    Show answer

    Answer: 9

    Zygote 2n (egg n + sperm n); primary endosperm nucleus 3n (two polar nuclei + one sperm); antipodal n and synergid n (gametophytic cells); seed coat 2n, because it develops from the integuments of the maternal sporophyte. Sum = 2 + 3 + 1 + 1 + 2 = 9. Treating the seed coat as part of the new generation, or the antipodals as diploid, are the common slips.
  3. Use the classic ABC model and an idealised Arabidopsis flower with 4 organs in whorl 1, 4 in whorl 2, 6 in whorl 3 and 2 in whorl 4, and assume each whorl keeps this number of organs in a mutant. In a plant that has completely lost A function (an apetala2 null allele, with C activity spreading into the outer whorls), how many stamens does one flower bear?

    Numerical answer — type the value.

    Show answer

    Answer: 10

    Without A, C spreads into whorls 1 and 2 because A and C are antagonistic. Whorl 1: C alone = carpels (4). Whorl 2: B + C = stamens (4). Whorl 3: B + C = stamens (6). Whorl 4: C alone = carpels (2). Stamens = 4 + 6 = 10. Answering 6 (only the wild-type stamens) or reading whorl 2 as sepals are the usual slips.
  4. A leaf peel shows 45 stomata and 255 other epidermal cells in the same field. Taking stomatal index = 100 × S/(S + E), where S is the number of stomata and E the number of other epidermal cells, the stomatal index is ____.

    Numerical answer — type the value.

    Show answer

    Answer: 15

    S + E = 45 + 255 = 300, so SI = 100 × 45/300 = 15. Dividing by E alone (100 × 45/255 ≈ 17.6) is the usual slip: the denominator is all counted cells, stomata included.
  5. In the classic tobacco pith callus experiments of Skoog and Miller, a medium with a high ratio of cytokinin to auxin caused the callus to

    1. form roots, while a high auxin-to-cytokinin ratio gave shoot buds
    2. stop dividing and senesce, because cytokinin alone blocks the cell cycle
    3. grow only as undifferentiated callus, whatever the absolute concentrations
    4. form shoot buds, while a high auxin-to-cytokinin ratio gave roots
    Show answer

    Answer: D — form shoot buds, while a high auxin-to-cytokinin ratio gave roots

    Skoog and Miller (1957) showed that the ratio of the two hormones decides organ formation: high cytokinin:auxin favours shoots, high auxin:cytokinin favours roots, and intermediate ratios keep the callus growing unorganised. The reversed pairing is the tempting error. Cytokinin promotes cell division when auxin is present; it does not block it.
  6. Transgenic Arabidopsis plants express both APETALA3 and PISTILLATA from a constitutive promoter in all four floral whorls, while A and C functions remain normal. The expected flowers bear, from the outside inward,

    1. sepals, petals, stamens, carpels, because extra B protein is inactive outside its normal domain
    2. petals, petals, stamens, stamens, because B combines with A in whorl 1 and with C in whorl 4
    3. stamens, stamens, stamens, stamens, because B overrides the A and C functions in every whorl
    4. sepals, sepals, carpels, carpels, because surplus B protein competes away the A and C proteins
    Show answer

    Answer: B — petals, petals, stamens, stamens, because B combines with A in whorl 1 and with C in whorl 4

    Adding B everywhere turns whorl 1, which has A, into A + B, a petal, and whorl 4, which has C, into B + C, a stamen, giving petals, petals, stamens, stamens. B does not override A or C; organ identity follows from the combination present in each whorl. Sepals, sepals, carpels, carpels is the B-loss phenotype, the opposite manipulation.
  7. Which of the following statements about pollen-tube growth and double fertilisation are correct?

    1. In chalazogamy, the pollen tube enters the ovule through the micropyle
    2. Synergid cells secrete LURE peptides that attract the pollen tube towards the ovule
    3. The primary endosperm nucleus is formed when a sperm fuses with the egg nucleus
    4. The pollen tube discharges its sperm into one of the synergids, which then degenerates
    Show answer

    Answer: B — Synergid cells secrete LURE peptides that attract the pollen tube towards the ovule; D — The pollen tube discharges its sperm into one of the synergids, which then degenerates

    LUREs, cysteine-rich peptides secreted by the synergids, guide the tube at short range, and the tube bursts inside a receptive synergid, which degenerates as the two sperm are released. In chalazogamy (as in Casuarina) the tube enters through the chalaza; entry through the micropyle is porogamy. Sperm–egg fusion gives the zygote; the primary endosperm nucleus comes from a sperm fusing with the two polar nuclei.
  8. A short-day plant is kept on an inductive cycle of 9 h light and 15 h darkness. In one set, a 5-min flash of red light is given in the middle of each dark period; in a second set, the red flash is followed at once by 5 min of far-red light. What is expected?

    1. Both sets flower, because the total duration of darkness is almost unchanged
    2. Neither set flowers, because any light given during the night resets the clock
    3. The first set flowers and the second does not, because far-red lengthens the effective photoperiod
    4. The first set does not flower and the second does, because far-red reverses the red night break
    Show answer

    Answer: D — The first set does not flower and the second does, because far-red reverses the red night break

    Short-day plants require an uninterrupted long night. A red night break converts Pr to Pfr and splits the night into two short ones, so flowering is prevented; far-red given immediately afterwards converts Pfr back to Pr, cancelling the break, so flowering proceeds. ‘Both flower’ is the tempting answer if one thinks only of total darkness, but the plant responds to the continuity of the dark period, not its total length.
  9. In grafting and transport experiments on Arabidopsis and rice, the long-distance florigen signal that moves from induced leaves to the shoot apex is

    1. CONSTANS protein, exported from the leaf to activate floral genes at the apex
    2. FLOWERING LOCUS T protein, made in phloem companion cells and acting with FD at the apex
    3. FLOWERING LOCUS C protein, which travels in the phloem to repress floral repressors
    4. phytochrome B, which moves from the leaf blade to the apex once it has absorbed red light
    Show answer

    Answer: B — FLOWERING LOCUS T protein, made in phloem companion cells and acting with FD at the apex

    CO acts inside the leaf, in companion cells, where it switches on FT; the FT protein (Hd3a in rice) travels through the phloem to the apex and partners the bZIP factor FD to activate floral genes. CO is the tempting choice because it is the long-day sensor, but it is not the mobile signal. FLC is a repressor of FT, and phytochrome does not travel to the apex.
  10. A winter-annual Arabidopsis plant given six weeks at 4 °C flowers soon after it is returned to warm long days, yet seedlings raised from its seeds again flower only after a cold treatment. The best explanation is that

    1. cold destroys FRIGIDA protein, which the plant cannot make again until the next generation
    2. cold mutates the FLC gene in the shoot apex, and the mutation is never passed on to the seeds formed later
    3. cold silences FLC by Polycomb-deposited H3K27me3, kept through mitosis but reset in the next generation
    4. cold induces FT protein that is stored in the leaves and is used up before the seeds are formed
    Show answer

    Answer: C — cold silences FLC by Polycomb-deposited H3K27me3, kept through mitosis but reset in the next generation

    Vernalisation silences FLC epigenetically: VIN3 and PRC2 (with VRN2) lay down H3K27 trimethylation, which is copied through cell divisions after warming, a cellular memory of winter, but erased when FLC is reactivated in the next generation. A mutation in the apex would be carried into the flowers and passed to the seeds, so it cannot explain the reset. FRIGIDA is not destroyed by cold, and FT is made in leaves in response to long days, not stored from the cold period.
  11. Arabidopsis embryos homozygous for loss-of-function monopteros (ARF5) alleles lack a root and hypocotyl. The best explanation is that

    1. auxin reaching the embryo base cannot switch on the response that makes the hypophysis the root founder
    2. the zygote divides symmetrically, so neither a basal cell nor a suspensor is ever formed
    3. PIN proteins cannot be trafficked to the plasma membrane, so the embryo becomes a ball without polarity
    4. the shoot stem cells are not maintained, so the apical half of the embryo is converted into root
    Show answer

    Answer: A — auxin reaching the embryo base cannot switch on the response that makes the hypophysis the root founder

    MP is an auxin-response factor. When auxin, delivered by PIN1 and PIN7, degrades its inhibitor BODENLOS, MP activates genes in the basal embryo cells that signal to the hypophysis and specify the root; without MP the root and hypocotyl are missing, while the shoot pole forms. Failure of PIN trafficking describes gnom, the tempting confusion, whose embryos lose apical–basal polarity altogether. The zygote division and the shoot stem cells are normal in mp.
  12. Which of the following statements about plant photoreceptors are correct?

    1. Pr absorbs red light maximally and is converted to Pfr, the biologically active form of phytochrome
    2. Cryptochromes use phytochromobilin as their chromophore to sense far-red light
    3. Phototropins carry two LOV domains that bind FMN, linked to a serine/threonine kinase domain
    4. A low red:far-red ratio under a canopy raises the Pfr fraction and slows stem elongation
    Show answer

    Answer: A — Pr absorbs red light maximally and is converted to Pfr, the biologically active form of phytochrome; C — Phototropins carry two LOV domains that bind FMN, linked to a serine/threonine kinase domain

    Red light converts Pr to the active Pfr form, and phototropins are blue-light receptor kinases with two FMN-binding LOV domains (phototropism, chloroplast movement, stomatal opening). Cryptochromes are blue/UV-A receptors with FAD and a pterin; phytochromobilin belongs to phytochrome. Canopy shade lowers red:far-red, which lowers Pfr and speeds elongation (shade avoidance).
  13. Dark-grown seedlings of the Arabidopsis mutant det2 have short hypocotyls and open cotyledons, and the defect is rescued by applying brassinolide. This shows that

    1. DET2 is a photoreceptor whose loss makes the seedling behave as though it were in light
    2. brassinosteroids inhibit hypocotyl growth, so the mutant must overproduce them in darkness
    3. DET2 is needed to make brassinosteroids, which sustain etiolated growth in darkness
    4. DET2 encodes the receptor kinase BRI1, which binds brassinolide at the plasma membrane
    Show answer

    Answer: C — DET2 is needed to make brassinosteroids, which sustain etiolated growth in darkness

    Rescue by the hormone means the mutant lacks the hormone, so DET2 acts in brassinosteroid biosynthesis (it encodes a steroid 5α-reductase), and BRs are needed for the long hypocotyl and closed cotyledons of etiolated seedlings. A receptor mutant such as bri1 could not be rescued by brassinolide. DET2 is not a photoreceptor; the light-grown look resembles cop1, whose cause is a failure to degrade HY5.
  14. Loss-of-function clavata3 mutants of Arabidopsis have an enlarged shoot apical meristem and flowers with extra organs, especially extra carpels. The best explanation is that

    1. the WUSCHEL domain expands because the CLV3 peptide no longer represses WUS through its receptor
    2. SHOOT MERISTEMLESS is lost, so the cells in the centre of the meristem divide much faster
    3. auxin maxima stop forming in the peripheral zone, so that no primordia ever leave the meristem at all
    4. AGAMOUS is overexpressed, so the floral meristem never stops producing new carpels
    Show answer

    Answer: A — the WUSCHEL domain expands because the CLV3 peptide no longer represses WUS through its receptor

    CLV3, secreted by the stem cells, signals through CLV1 to restrict WUS expression; without it WUS spreads, more cells are kept as stem cells, the meristem enlarges and floral meristems make extra organs. Loss of STM causes the opposite, a missing meristem; failure of auxin maxima gives pin-like stems without primordia; and AGAMOUS actually terminates the floral meristem by repressing WUS.
  15. Arabidopsis roots homozygous for a null shortroot allele have

    1. an extra layer of ground tissue, because the cortex initials divide twice
    2. a single ground-tissue layer that lacks endodermal identity
    3. a normal endodermis but no cortex, because SHR acts only in the cortex
    4. a single ground-tissue layer with both cortical and endodermal features
    Show answer

    Answer: B — a single ground-tissue layer that lacks endodermal identity

    SHR moves from the stele into the adjacent layer, where with SCR it drives the periclinal division that separates endodermis from cortex and specifies the endodermis. Without SHR there is one layer, and it lacks endodermal markers (it is cortex-like); the meristem also runs down over time. A single layer with mixed features is the scarecrow phenotype, the tempting confusion.
  16. Which sequence correctly describes how an isolated Zinnia mesophyll cell, cultured with auxin and cytokinin, becomes a tracheary element?

    1. Loss of the nucleus and organelles, building callose-lined sieve plates, then support by a companion cell
    2. Programmed cell death first, then deposition of lignified walls around it by neighbouring parenchyma cells
    3. Repeated asymmetric divisions to form a meristemoid, then one symmetric division into two guard cells
    4. Dedifferentiation, patterned lignified secondary walls, then programmed death with vacuole rupture
    Show answer

    Answer: D — Dedifferentiation, patterned lignified secondary walls, then programmed death with vacuole rupture

    In the Zinnia system the mesophyll cell dedifferentiates, builds a patterned secondary wall that is lignified, and then dies by programmed cell death, in which the vacuole ruptures and hydrolases clear the protoplast, leaving a hollow tube. The cell builds its own wall before dying, which rules out the death-first sequence. Enucleation with sieve plates describes a sieve element, and the meristemoid route describes stomatal development.
  17. Which of the following statements about the spacing of trichomes and stomata in Arabidopsis are correct?

    1. FAMA is required for the asymmetric entry division that first creates a meristemoid
    2. speechless mutants make no stomata because the asymmetric entry division does not occur
    3. STOMAGEN secreted from the mesophyll lowers stomatal density
    4. triptychon mutants form clustered trichomes because a mobile inhibitor of trichome fate is missing
    Show answer

    Answer: B — *speechless* mutants make no stomata because the asymmetric entry division does not occur; D — *triptychon* mutants form clustered trichomes because a mobile inhibitor of trichome fate is missing

    SPCH drives the entry division, so spch leaves have only pavement cells, and TRY is a small MYB protein that moves to neighbours and blocks the GL1–GL3–TTG1 complex, so try leaves have clustered trichomes. FAMA acts last, in the guard mother cell, to make guard cells, and STOMAGEN (EPFL9) raises stomatal density.
  18. The Green Revolution semi-dwarf wheats carry the Rht-B1b or Rht-D1b alleles. Their short stature is explained by

    1. loss of a GA 20-oxidase, so that far too little active gibberellin is made in the elongating stem
    2. loss of the GID1 receptor, so gibberellin cannot bind at all in the elongating cells
    3. DELLA proteins that resist GA-triggered degradation, so growth stays repressed despite GA
    4. overproduction of brassinosteroids, which divert growth from the stem into the grain
    Show answer

    Answer: C — DELLA proteins that resist GA-triggered degradation, so growth stays repressed despite GA

    Rht-B1b and Rht-D1b encode N-terminally truncated DELLA proteins that cannot be targeted for degradation after GA binds GID1, so they keep repressing growth: the plants are GA-insensitive, with normal or raised GA levels. Loss of GA 20-oxidase is the tempting choice because it causes the rice Green Revolution semi-dwarf sd1, a GA-deficient mutant that applied GA would rescue, unlike Rht wheat. Brassinosteroid overproduction is not involved.